blob: 42afb0f33611e4ed00852c1cf511b13fc93ff771 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=orthos
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="\`orthos\` is an R package for variance decomposition using conditional variational auto-encoders"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-annotationhub
r-basilisk
r-biocparallel
r-colorspace
r-cowplot
r-delayedarray
r-dplyr
r-experimenthub
r-ggplot2
r-ggpubr
r-ggrepel
r-ggsci
r-hdf5array
r-keras
r-orthosdata
r-plyr
r-reticulate
r-rlang
r-s4vectors
r-summarizedexperiment
r-tensorflow
r-tidyr
)
optdepends=(
r-biocmanager
r-biocstyle
r-htmltools
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('3316b673163e98bcac6891dde1f2da72')
b2sums=('0b4d2f621b5e0371a63f65b0d7aa5742492791f0815c6ac4b6e42b9294709f5a0e85df913efd27c1e4c333c171714a2637595c6e6062a5db76a9522b118f0475')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
|