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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=orthos
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="\`orthos\` is an R package for variance decomposition using conditional variational auto-encoders"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-annotationhub
r-basilisk
r-biocparallel
r-colorspace
r-cowplot
r-delayedarray
r-dplyr
r-experimenthub
r-ggplot2
r-ggpubr
r-ggrepel
r-ggsci
r-hdf5array
r-keras
r-orthosdata
r-plyr
r-reticulate
r-rlang
r-s4vectors
r-summarizedexperiment
r-tensorflow
r-tidyr
)
optdepends=(
r-biocmanager
r-biocstyle
r-htmltools
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('bea22407249492b848226f5d73969cce')
b2sums=('74e258f6f89aa05f8b0b9b4f99a0ef9c169b58474271d29b421ef266de51408bad6a55c4635649d3f1260983dc3ee7a07a055e5f88b20fc9ac6b540607a12604')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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