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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=pathwayPCA
_pkgver=1.22.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-lars
)
optdepends=(
r-airway
r-circlize
r-knitr
r-rcurl
r-reshape2
r-rmarkdown
r-summarizedexperiment
r-survminer
r-testthat
r-tidyverse
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('0129956bd4573766d7168fcbf6d7d9a1')
b2sums=('6cb856fea30afd812e99f919c87978162ec1dd50cc3adb8d553835c2b6fb941ec6b767a08414d3f53185d11040a6a36c73e258cb62f667c1a4ab6585974af1c2')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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