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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=pgca
_pkgver=1.28.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="An Algorithm to Link Protein Groups Created from MS/MS Data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-or-later')
depends=(
  r
)
optdepends=(
  r-knitr
  r-rmarkdown
  r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('cb247e413e4afbb4b1eab25152b743b2')
b2sums=('b05a4d9aa502e198386604790b223e068e612e9bdb661a5f0381fa4378f4861f876ee5180d497e367cf9056242c9e644fc7f1416906bb0df38165e024614703d')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}