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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=phantasus
_pkgver=1.24.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Visual and interactive gene expression analysis"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-annotationdbi
r-assertthat
r-biobase
r-ccapp
r-config
r-curl
r-data.table
r-deseq2
r-edger
r-fgsea
r-fs
r-geoquery
r-ggplot2
r-gtable
r-htmltools
r-httpuv
r-httr
r-jsonlite
r-limma
r-opencpu
r-phantasuslite
r-pheatmap
r-protolite
r-rhdf5
r-rhdf5client
r-rook
r-scales
r-stringr
r-svglite
r-xml
r-yaml
)
optdepends=(
r-biocstyle
r-knitr
r-org.hs.eg.db
r-org.mm.eg.db
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('2f928065c75c3581ae26e7129339f1bc')
b2sums=('66b0cd827bc5b3b77654daa61898521ca97090d94843f0552614302edaac7599283fcf6442dcdd638526c58380fbe888c171a8f79b7b7de67fe94b1f94d75c11')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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