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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=phemd
_pkgver=1.18.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Phenotypic EMD for comparison of single-cell samples"
arch=(any)
url="https://bioconductor.org/packages/${_pkgname}"
license=(GPL2)
depends=(
r-biobase
r-biocgenerics
r-cowplot
r-destiny
r-ggplot2
r-igraph
r-maptree
r-monocle
r-phater
r-pheatmap
r-pracma
r-rann
r-rcolorbrewer
r-reticulate
r-rtsne
r-s4vectors
r-scatterplot3d
r-seurat
r-singlecellexperiment
r-summarizedexperiment
r-transport
r-vgam
)
optdepends=(
r-biocstyle
r-knitr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('8cefd4ddfea1dd2deb007acb6cebfb7a')
sha256sums=('03c5354299deefdf02142f4fc7d8464aac1489a62b719f1caf026b1b8db8929c')
build() {
mkdir -p build
R CMD INSTALL "$_pkgname" -l build
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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