blob: f66df4aec43c5af79e4dd061703aa0030acc1e1b (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=PhIPData
_pkgver=1.12.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Container for PhIP-Seq Experiments"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-biocfilecache
r-biocgenerics
r-cli
r-edger
r-genomicranges
r-iranges
r-s4vectors
r-summarizedexperiment
)
checkdepends=(
r-readr
r-testthat
)
optdepends=(
r-biocstyle
r-covr
r-dplyr
r-knitr
r-readr
r-rmarkdown
r-testthat
r-withr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('b49addead15f0f531e89c8ec5471eda4')
b2sums=('78e65ee7d860b3350a74ca7a7df9b444e5d427066ae8859549447e58ea50eaafe9f5947895934035b5579f41d7550bd5685a6af0dc457030a8ea4b92841a2952')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
|