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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=PICS
_pkgver=2.51.0
pkgname=r-${_pkgname,,}
pkgver=2.51.0
pkgrel=1
pkgdesc='Probabilistic inference of ChIP-seq'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-genomicalignments
r-genomicranges
r-iranges
r-rsamtools
gsl
)
optdepends=(
r-knitr
r-parallel
r-rtracklayer
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('67375d83201f039629ea567c18a53e0e71a60aaa4ce74b9800491435458a90b9')
prepare() {
cd $srcdir/${_pkgname}
# For R 4.5.0+
sed -i src/segment.c \
-e 's|Calloc|R_Calloc|g' \
-e 's|Realloc|R_Realloc|g' \
-e 's|Free|R_Free|g'
# sed -i src/Rgshhs.c -e 's|error(msg)|error("%s",msg)|g'
cd $srcdir
tar -czf $_pkgname-$_pkgver.tar.gz ${_pkgname}
}
build() {
R CMD INSTALL ${_pkgname}-${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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