blob: ec3e638da75492d901f32350207003b1813ff894 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=Pigengene
_pkgver=1.30.0
pkgname=r-${_pkgname,,}
pkgver=1.30.0
pkgrel=1
pkgdesc='Infers biological signatures from gene expression data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biocstyle
r-bnlearn
r-c50
r-clusterprofiler
r-dbi
r-dose
r-dplyr
r-gdata
r-ggplot2
r-go.db
r-graph
r-impute
r-matrixstats
r-openxlsx
r-partykit
r-pheatmap
r-preprocesscore
r-reactomepa
r-rgraphviz
r-wgcna
)
optdepends=(
r-annotationdbi
r-biomart
r-energy
r-knitr
r-org.hs.eg.db
r-org.mm.eg.db
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('ecaa7b5200cc39eb0d5b5913ee3c90c01d9763803d5d8960d47dbfd1d9b14f22')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
|