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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=plyinteractions
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Extending tidy verbs to genomic interactions"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-biocgenerics
r-dplyr
r-genomeinfodb
r-genomicranges
r-interactionset
r-iranges
r-plyranges
r-rlang
r-s4vectors
r-tibble
r-tidyselect
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocparallel
r-biocstyle
r-biostrings
r-bsgenome.mmusculus.ucsc.mm10
r-covr
r-hicontactsdata
r-knitr
r-refmanager
r-rmarkdown
r-rtracklayer
r-scales
r-sessioninfo
r-testthat
r-tidyverse
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('096a42786083c5af594646d3102dbc04')
b2sums=('c82591f8f1b21322eb8d296e25792cb478747977eb9fc319854a67df7176ae01405acce71cb40b6d588d6b5fcd488e39dd7f34fd971e15275edb2189309a0b54')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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