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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=plyinteractions
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Extending tidy verbs to genomic interactions"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-biocgenerics
r-dplyr
r-genomeinfodb
r-genomicranges
r-interactionset
r-iranges
r-plyranges
r-rlang
r-s4vectors
r-tibble
r-tidyselect
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocparallel
r-biocstyle
r-biostrings
r-bsgenome.mmusculus.ucsc.mm10
r-covr
r-hicontactsdata
r-knitr
r-refmanager
r-rmarkdown
r-rtracklayer
r-scales
r-sessioninfo
r-testthat
r-tidyverse
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('1dd6aab852245e89ebc7e2b1df6fff25')
b2sums=('dc529b089ae778db2c117ea3a18cd86e75991f462c47aa4fdf4d1fc83edc0873667f7ec1a48a2c6a8cdbaa6d9b09980cf6727a0b076f53496d5280eedb1fc552')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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