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# system requirements: GNU make, C++11
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=pqsfinder
_pkgver=2.22.0
pkgname=r-${_pkgname,,}
pkgver=2.22.0
pkgrel=1
pkgdesc='Identification of potential quadruplex forming sequences'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('BSD')
depends=(
r
r-bh
r-biostrings
r-genomicranges
r-iranges
r-rcpp
r-s4vectors
make
gcc
)
optdepends=(
r-biocstyle
r-bsgenome.hsapiens.ucsc.hg38
r-ggplot2
r-gviz
r-knitr
r-rmarkdown
r-rtracklayer
r-stringi
r-stringr
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('44b973cbd1bf971b9bc0cb2684c6a30538c293e30286d86bc2c9567ade27bf67')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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