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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=proActiv
_pkgver=1.14.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Estimate Promoter Activity from RNA-Seq data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-annotationdbi
r-biocparallel
r-data.table
r-deseq2
r-dplyr
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-ggplot2
r-gplots
r-iranges
r-rlang
r-s4vectors
r-scales
r-summarizedexperiment
r-tibble
r-txdbmaker
)
optdepends=(
r-gridextra
r-knitr
r-rmarkdown
r-rtsne
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('b41f3047e8eea9f19a7829524e190786')
b2sums=('7d0cef54045b3686fb4a0bca705fba52f2553b7a6704b7f26924c95b3dd5547d414ed5737d52b800a3dba08d8c16e1ea5314a7c1ccff4804c04f4e233e7986e5')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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