PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=proBAMr
_pkgver=1.42.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Generating SAM file for PSMs in shotgun proteomics data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
  r-annotationdbi
  r-biostrings
  r-genomicfeatures
  r-genomicranges
  r-iranges
  r-rtracklayer
  r-txdbmaker
)
optdepends=(
  r-biocgenerics
  r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('425f498bfb7a246e768a84de8fa88741')
b2sums=('44e1e6350f41d08add9ebcee418cd0b6995485a8af0e12472a479df2172610821ecab949ec2e7009689fbcd4590560c67605dc8b12b08a6b62db6f846fb8d56d')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}