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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=projectR
_pkgver=1.20.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only')
depends=(
r-cowplot
r-dplyr
r-fgsea
r-ggalluvial
r-ggplot2
r-ggrepel
r-limma
r-matrixmodels
r-msigdbr
r-nmf
r-rcolorbrewer
r-reshape2
r-rocr
r-scales
r-tsne
r-umap
r-viridis
)
optdepends=(
r-biocstyle
r-cogaps
r-complexheatmap
r-devtools
r-gplots
r-gridextra
r-knitr
r-rmarkdown
r-rmarkdown
r-seuratobject
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('7dbc988526df54d7c87f57bcb7dbaa76')
b2sums=('a935579429e123158a655fe406e2a0e2ba9102eb4660ea8ef09ca7916e5f4239ce13a03280f7cb9bc21650a837fdbeda3f7dd35626483d67d88d75a1b66a19c9')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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