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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=projectR
_pkgver=1.22.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only')
depends=(
r-cowplot
r-dplyr
r-fgsea
r-ggalluvial
r-ggplot2
r-ggrepel
r-limma
r-matrixmodels
r-msigdbr
r-nmf
r-rcolorbrewer
r-reshape2
r-rocr
r-scales
r-tsne
r-umap
r-viridis
)
optdepends=(
r-biocstyle
r-cogaps
r-complexheatmap
r-devtools
r-gplots
r-gridextra
r-knitr
r-rmarkdown
r-rmarkdown
r-seuratobject
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('31626fd24bbeeaaf849ed5487f363a39')
b2sums=('7df15f28ef490b51570cf8ec2ebdbecd015cc9024827b7ca89cff0d546658e3c832fb6e4c2b39d393f6c1f7ed37a29a8b11532f08189e52fd8c43e52146fac91')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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