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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=ProteoDisco
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=1.10.0
pkgrel=1
pkgdesc='Generation of customized protein variant databases from genomic variants, splice-junctions and manual sequences'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biocgenerics
r-biocparallel
r-biostrings
r-checkmate
r-cleaver
r-dplyr
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-iranges
r-parallellogger
r-plyr
r-rlang
r-s4vectors
r-tibble
r-tidyr
r-variantannotation
r-xvector
)
optdepends=(
r-annotationdbi
r-biocstyle
r-bsgenome
r-bsgenome.hsapiens.ucsc.hg19
r-delayedarray
r-devtools
r-ggplot2
r-knitr
r-markdown
r-matrixstats
r-org.hs.eg.db
r-purrr
r-rcurl
r-readr
r-reshape2
r-rmarkdown
r-rtracklayer
r-scales
r-seqinr
r-stringr
r-testthat
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('14ef61d328d8862edc28c7b364711e2e8e273f6042fcc614b930366563b48d81')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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