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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=psichomics
_pkgver=1.28.1
pkgname=r-${_pkgname,,}
pkgver=1.28.1
pkgrel=1
pkgdesc='Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-annotationdbi
r-annotationhub
r-biocfilecache
r-colourpicker
r-data.table
r-digest
r-dplyr
r-dt
r-edger
r-fastica
r-fastmatch
r-ggplot2
r-ggrepel
r-highcharter
r-htmltools
r-httr
r-jsonlite
r-limma
r-pairsd3
r-plyr
r-purrr
r-r.utils
r-rcpp
r-recount
r-reshape2
r-rfast
r-shiny
r-shinybs
r-shinyjs
r-stringr
r-summarizedexperiment
r-xml
r-xtable
)
optdepends=(
r-car
r-covr
r-devtools
r-gplots
r-knitr
r-parallel
r-rmarkdown
r-rstudioapi
r-spelling
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('ec00f9ba9cb85ddbc9006ec31b51d1f22315b63209fe19a6e39fccd13bc052cd')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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