blob: 5baea87b813a2bcf8c61601ca0afc7ec9e5f5233 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=PureCN
_pkgver=2.12.0
pkgname=r-${_pkgname,,}
pkgver=2.12.0
pkgrel=1
pkgdesc='Copy number calling and SNV classification using targeted short read sequencing'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-biobase
r-biocgenerics
r-biostrings
r-data.table
r-dnacopy
r-futile.logger
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-ggplot2
r-gridextra
r-iranges
r-mclust
r-rcolorbrewer
r-rhdf5
r-rsamtools
r-rtracklayer
r-s4vectors
r-summarizedexperiment
r-variantannotation
r-vgam
)
optdepends=(
r-biocparallel
r-biocstyle
r-covr
r-genomicsdb
r-jsonlite
r-knitr
r-markdown
r-optparse
r-org.hs.eg.db
r-pscbs
r-r.utils
r-rmarkdown
r-testthat
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('1ef89da087a265b5119e30cf8aa93c411f2d09eb555f5e4d3244bff330654478')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
|