blob: b9ab0c14de81be0ea2098345a01ee0a205673a56 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=pwalign
_pkgver=1.0.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Perform pairwise sequence alignments"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-biocgenerics
r-biostrings
r-iranges
r-s4vectors
)
makedepends=(
r-xvector
)
checkdepends=(
r-runit
)
optdepends=(
r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('6c55f043ee827d70a7992b8fa85c43f2')
b2sums=('96cd3c929dac7de03e5cc56ee4301aa587db94dc6aeaef4d30aaf406f53363b22be1548cd5daa918d67d3299a5cb3730803e47086f9f2a59a20c32c492ccc1e0')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" Rscript --vanilla run_unitTests.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|