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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=QFeatures
_pkgver=1.16.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Quantitative features for mass spectrometry data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-annotationfilter
r-biobase
r-biocgenerics
r-igraph
r-iranges
r-lazyeval
r-mscoreutils
r-multiassayexperiment
r-plotly
r-protgenerics
r-reshape2
r-s4vectors
r-summarizedexperiment
r-tidyr
r-tidyselect
)
optdepends=(
r-biocstyle
r-complexheatmap
r-dplyr
r-dt
r-ggplot2
r-gplots
r-hdf5array
r-impute
r-imputelcmd
r-knitr
r-limma
r-matrixstats
r-msdata
r-msdatahub
r-norm
r-pcamethods
r-preprocesscore
r-rmarkdown
r-shiny
r-shinydashboard
r-singlecellexperiment
r-testthat
r-vsn
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('6013e8d25e7c98cfca285254718744c3')
b2sums=('3350298c53e0736816ad15f19fa2a6bebf4620ef55e4cb659a05fb5da30722d30db88c17c76c05c596a60cebd863521a99c092d159d4997bb3578106b7d07917')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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