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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=QTLExperiment
_pkgver=2.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="S4 classes for QTL summary statistics and metadata"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-ashr
r-biocgenerics
r-checkmate
r-collapse
r-dplyr
r-rlang
r-s4vectors
r-summarizedexperiment
r-tibble
r-tidyr
r-vroom
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-covr
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('6eec02c192567f820b4a4e0bf836a4ba')
b2sums=('0e45964c14e8c301f5364701e3cab28058745e120ac2ed320bd2472f9ead737370107cbb0821462f7305cd927c5062f25bf7a5e58e8bd5ea0cf3a9c084a02396')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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