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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=R3CPET
_pkgver=1.34.1
pkgname=r-${_pkgname,,}
pkgver=1.34.1
pkgrel=1
pkgdesc='3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biocgenerics
r-clvalid
r-data.table
r-genomeinfodb
r-genomicranges
r-ggbio
r-ggplot2
r-hmisc
r-igraph
r-iranges
r-pheatmap
r-rcpp
r-rcurl
r-reshape2
r-s4vectors
)
optdepends=(
r-annotationdbi
r-biocstyle
r-biomart
r-biovizbase
r-chippeakanno
r-knitr
r-org.hs.eg.db
r-shiny
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('4861a3e236229212150e1b17bc75239783250986cef4759ae64e7b63b4d9192c')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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