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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=RAREsim
_pkgver=1.16.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Simulation of Rare Variant Genetic Data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-nloptr
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-ggplot2
r-knitr
r-markdown
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('188b384fb2f7aa601104fb5799a001f4')
b2sums=('d5818ae6e3ee3f03042033180454757dd114bfe1470bc16dbd47f39e17a932164360895995566fadc0b759e4b210ab84d3f8971982b6832a6c5069f74d8aa05a')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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