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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=RareVariantVis
_pkgver=2.30.0
pkgname=r-${_pkgname,,}
pkgver=2.30.0
pkgrel=1
pkgdesc='A suite for analysis of rare genomic variants in whole genome sequencing data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-biocgenerics
r-bsgenome
r-bsgenome.hsapiens.ucsc.hg19
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-genomicscores
r-googlevis
r-gtools
r-iranges
r-phastcons100way.ucsc.hg19
r-s4vectors
r-summarizedexperiment
r-txdb.hsapiens.ucsc.hg19.knowngene
r-variantannotation
)
optdepends=(
r-knitr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('59d6a9c447ad649d107635413ba1df64dd7cfe578e605834183fd0461b61e257')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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