PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=rBiopaxParser
_pkgver=2.46.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Parses BioPax files and represents them in R"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-or-later')
depends=(
  r-data.table
  r-xml
)
optdepends=(
  r-biocgenerics
  r-graph
  r-igraph
  r-rbgl
  r-rcurl
  r-rgraphviz
  r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('8d29fadf37c6f8a0d5dbdd683db3e540')
b2sums=('a95d0d3af9e4466711cfb3625e0914495700008c11d8f535e6fbb14a88ed5e94e0b9fe610f1785bfc57ad91336788df0ad49c48201c9b963c16f72f04cfdef9f')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}