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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=RCy3
_pkgver=2.30.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Functions to Access and Control Cytoscape"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-base64enc
r-base64url
r-biocgenerics
r-fs
r-glue
r-gplots
r-graph
r-httr
r-irdisplay
r-irkernel
r-rcolorbrewer
r-rcurl
r-rjsonio
r-stringi
r-uuid
r-xml
)
optdepends=(
r-biocstyle
r-igraph
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('9e3c28120a04587724bdf90dc0ecadd3')
b2sums=('762d6e600574ce9650ecf2243bff4ed44d2484b4d1e678086bcbf134bc29dd0e99330ad7dfc45656001106f9c740d4618fe7a6b0d4d3154980bca525f67e4ba7')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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