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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=recoup
_pkgver=1.36.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="An R package for the creation of complex genomic profile plots"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-or-later')
depends=(
r-biocgenerics
r-biomart
r-biostrings
r-circlize
r-complexheatmap
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-ggplot2
r-httr
r-iranges
r-rsamtools
r-rsqlite
r-rtracklayer
r-s4vectors
r-stringr
r-txdbmaker
)
optdepends=(
r-biocmanager
r-biocstyle
r-bsgenome
r-knitr
r-rmarkdown
r-rmysql
r-runit
r-zoo
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('df4105d40be95411e71577daa9c0a7e8')
b2sums=('51df306468ace612be42c9eceaf0b9246f99d60f2af2346bebfab07cf094618fcebdc0a1474acf32e3dfb253841aefdb2bd47ca93cd4c54912b6632d1a5a3c09')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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