blob: a085d32486cc2b88eca03f74adac5ba2d5f2f99b (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=recoup
_pkgver=1.32.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="An R package for the creation of complex genomic profile plots"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-or-later')
depends=(
r-biocgenerics
r-biomart
r-biostrings
r-circlize
r-complexheatmap
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-ggplot2
r-httr
r-iranges
r-rsamtools
r-rsqlite
r-rtracklayer
r-s4vectors
r-stringr
r-txdbmaker
)
optdepends=(
r-biocmanager
r-biocstyle
r-bsgenome
r-knitr
r-rmarkdown
r-rmysql
r-runit
r-zoo
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('8eed3be079e7850d78065e6faf64a07c')
b2sums=('3c70f1054c63b501cc4b83be06f40cb982df1f62fb1886c7ed8387542f6ec319e194ac6a6d6dfcda7d4e44102957edcb1ba4aad3004a113f7cf53723755f8c12')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|