PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=RedeR
_pkgver=3.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Interactive visualization and manipulation of nested networks"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
  'java-runtime>=11'
  r-igraph
  r-scales
)
optdepends=(
  r-biocstyle
  r-knitr
  r-markdown
  r-rmarkdown
  r-treeandleaf
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('6ded86bfe1025ed0b1a134fa650bd580')
b2sums=('a2cfb4aa8bb1ec8b447a9b466beb9e78b7e01f7228671ed992b69567843856e42b1498590c308ef90bd1525d949a9ad86a7d562af1bf70ba969269945eebcaed')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}