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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=RegionalST
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Investigating regions of interest and performing cross-regional analysis with spatial transcriptomics data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-assertthat
r-bayesspace
r-colorspace
r-dplyr
r-fgsea
r-ggplot2
r-gridextra
r-magrittr
r-rcolorbrewer
r-s4vectors
r-scater
r-seurat
r-shiny
r-singlecellexperiment
r-summarizedexperiment
r-tibble
r-toast
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-gplots
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('09f2ca1e03d5642dc250df00c8f3baff')
b2sums=('efd5284f3855ba18b58794570b44211c0a5b214bc2c5ddae3b43f065cb3ccafad162f7389ff0f6b6b9a059d0dd1b8f16f104212b4c7e7ca02dab37b3e8301d52')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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