summarylogtreecommitdiffstats
path: root/PKGBUILD
blob: e7fb7cf50fd5dc5945db771ea36b84f7ee64ea14 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=regionReport
_pkgver=1.32.0
pkgname=r-${_pkgname,,}
pkgver=1.32.0
pkgrel=1
pkgdesc='Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
  r
  r-biocstyle
  r-deformats
  r-derfinder
  r-deseq2
  r-genomeinfodb
  r-genomicranges
  r-knitr
  r-knitrbootstrap
  r-refmanager
  r-rmarkdown
  r-s4vectors
  r-summarizedexperiment
)
optdepends=(
  r-biocmanager
  r-biovizbase
  r-bumphunter
  r-derfinderplot
  r-dt
  r-edger
  r-ggbio
  r-ggplot2
  r-grid
  r-gridextra
  r-iranges
  r-mgcv
  r-pasilla
  r-pheatmap
  r-rcolorbrewer
  r-sessioninfo
  r-txdb.hsapiens.ucsc.hg19.knowngene
  r-whisker
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('e0b31beed35bebcd8fe55b3f7b9d8d2473487ab04dd2a31a5c6543db42a99846')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: