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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=REMP
_pkgver=1.26.0
pkgname=r-${_pkgname,,}
pkgver=1.26.0
pkgrel=1
pkgdesc='Repetitive Element Methylation Prediction'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-annotationhub
r-biocgenerics
r-biocparallel
r-biostrings
r-bsgenome
r-caret
r-doparallel
r-foreach
r-genomeinfodb
r-genomicranges
r-impute
r-iranges
r-iterators
r-kernlab
r-minfi
r-org.hs.eg.db
r-ranger
r-readr
r-rtracklayer
r-s4vectors
r-settings
r-summarizedexperiment
)
optdepends=(
r-bsgenome.hsapiens.ucsc.hg19
r-bsgenome.hsapiens.ucsc.hg38
r-illuminahumanmethylation450kanno.ilmn12.hg19
r-illuminahumanmethylationepicanno.ilm10b2.hg19
r-knitr
r-minfidataepic
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('9164c082be8a4cd3b8ab89f1859b4d5e2bf54d1ee4d37be49d6c5e10dbeadea4')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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