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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=Repitools
_pkgver=1.50.0
pkgname=r-${_pkgname,,}
pkgver=1.50.0
pkgrel=1
pkgdesc='Epigenomic tools'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('LGPL')
depends=(
r
r-biocgenerics
r-biostrings
r-bsgenome
r-dnacopy
r-edger
r-genomeinfodb
r-genomicalignments
r-genomicranges
r-gplots
r-gsmoothr
r-iranges
r-ringo
r-rsamtools
r-rsolnp
r-rtracklayer
r-s4vectors
)
optdepends=(
r-bsgenome.hsapiens.ucsc.hg18
r-shortread
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('2fbd368ccfaeac7b5e8665ec3f780c6d1eafff0b2bb1f1bd42b2dc79228ff1fa')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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