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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=rexposome
_pkgver=1.26.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Exposome exploration and outcome data analysis"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
  r-biobase
  r-circlize
  r-corrplot
  r-factominer
  r-ggplot2
  r-ggrepel
  r-ggridges
  r-glmnet
  r-gplots
  r-gridextra
  r-gtools
  r-hmisc
  r-imputelcmd
  r-lme4
  r-lsr
  r-mice
  r-pryr
  r-reshape2
  r-s4vectors
  r-scales
  r-scatterplot3d
  r-stringr
)
optdepends=(
  r-biocstyle
  r-flexmix
  r-formatr
  r-knitr
  r-mclust
  r-rmarkdown
  r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('58ab0a0f9681338bc32e8a53ffbc5c10')
b2sums=('78ab0944876b7bcd76f255b4d11a412ba0b5a2bf3f66ecd7f7d475e0e0a585ba51b45229167957fb49d5f494c09925ec9ce782bf0ab11b91b5f009fab5ef1b5d')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"

  install -d "$pkgdir/usr/share/licenses/$pkgname"
  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}