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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=rGREAT
_pkgver=2.6.0
pkgname=r-${_pkgname,,}
pkgver=2.6.0
pkgrel=1
pkgdesc='Client for GREAT Analysis'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-annotationdbi
r-circlize
r-digest
r-doparallel
r-dt
r-foreach
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-getoptlong
r-globaloptions
r-go.db
r-iranges
r-org.hs.eg.db
r-progress
r-rcolorbrewer
r-rcpp
r-rcurl
r-rjson
r-s4vectors
r-shiny
r-txdb.hsapiens.ucsc.hg19.knowngene
r-txdb.hsapiens.ucsc.hg38.knowngene
)
optdepends=(
r-biocmanager
r-biomartgogenesets
r-keggrest
r-knitr
r-msigdbr
r-org.mm.eg.db
r-reactome.db
r-rmarkdown
r-testthat
r-uniprotkeywords
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('28b6e67d7d74d9c991e10a9bdc2d1048b5e14efef3fd3434ecc5fe6fadf35f6b')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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