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# system requirements: GNU make
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
# Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
_pkgname=Rhisat2
_pkgver=1.18.0
pkgname=r-${_pkgname,,}
pkgver=1.18.0
pkgrel=1
pkgdesc='R Wrapper for HISAT2 Aligner'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-genomicfeatures
r-genomicranges
r-sgseq
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('5830fa5e23b6d8e38614dd71ecabf364a40212663b79aec30231b6f531bfb4df')
# parallel compilation leads to the race conditions and installation fail
options=(!makeflags)
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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