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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=rifiComparative
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="'rifiComparative' compares the output of rifi from two different conditions"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only AND MIT')
depends=(
r-cowplot
r-devtools
r-domc
r-dplyr
r-dta
r-egg
r-foreach
r-ggplot2
r-ggrepel
r-lsd
r-reshape2
r-rlang
r-rtracklayer
r-s4vectors
r-scales
r-stringr
r-summarizedexperiment
r-tibble
r-writexl
)
optdepends=(
r-biocstyle
r-desctools
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('d3ce6a048c4757956cf1bc37d59b9c52')
b2sums=('7078862006a00414dbec65122cf1fa62b3755dff7d9d773e37cf6bb06049d46426833863d8c92428159de7dfd313914a106bf15c6b3e03e6622922248585ea84')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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