PKGBUILD


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# system requirements: Rcpp
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=RJMCMCNucleosomes
_pkgver=1.30.0
pkgname=r-${_pkgname,,}
pkgver=1.30.0
pkgrel=1
pkgdesc='Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-read data (MNase-Seq)'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
  r
  r-biocgenerics
  r-biocparallel
  r-consensusseeker
  r-genomeinfodb
  r-genomicranges
  r-iranges
  r-rcpp
  r-s4vectors
  gsl
)
optdepends=(
  r-biocstyle
  r-knitr
  r-nucleosim
  r-rmarkdown
  r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('ec69b07892796703fee623414760fe5d7af71a9c51b2bfd0378698ec5af43619')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: