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# system requirements: OpenBabel
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=RMassBank
_pkgver=3.14.0
pkgname=r-${_pkgname,,}
pkgver=3.14.0
pkgrel=1
pkgdesc='Workflow to process tandem MS files and build MassBank records'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
openbabel
r
r-assertthat
r-biobase
r-chemmineob
r-chemminer
r-data.table
r-digest
r-envipat
r-glue
r-httr
r-logger
r-msnbase
r-mzr
r-r.utils
r-rcdk
r-rcpp
r-readjdx
r-rjson
r-s4vectors
r-webchem
r-xml
r-yaml
)
optdepends=(
r-biocstyle
r-camera
r-gplots
r-knitr
r-rmarkdown
r-rmassbankdata
r-runit
r-xcms
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('9a2e1a4156286609425c2e8d31ffb8fd12f7026cc6e26339a9344e68a69cd517')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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