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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=RNAdecay
_pkgver=1.26.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Maximum Likelihood Decay Modeling of RNA Degradation Data"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only')
depends=(
r-ggplot2
r-gplots
r-nloptr
r-scales
r-tmb
)
makedepends=(
r-rcppeigen
)
optdepends=(
r-knitr
r-reshape2
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('234bd79f217035934dc16605bca37397')
b2sums=('abf2652aaa88c1605c424d7a3dca909a04f1858e7ede980ab47478701edb8e2feb75c53e8426269e2c400aa60fd92f0c77449d13e0739d363360db652151cddf')
build() {
mkdir build
# compilation needs a lot of memory
MAKEFLAGS+=" -j1"
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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