summarylogtreecommitdiffstats
path: root/PKGBUILD
blob: 1bff5c26662465569e3a415c1cf3b7e25a8d82b2 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=rnaseqcomp
_pkgver=1.34.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Benchmarks for RNA-seq Quantification Pipelines"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
  r-rcolorbrewer
)
optdepends=(
  r-biocstyle
  r-knitr
  r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('c3f0d08d4307424abd0e43d4c075e3bc')
b2sums=('567573c9d3f01caf8ea419663e3201248c3c8730698c2c225f8f73605584526b40248734fb56a62cc37cb421d5498691da9061f84bd0e37d5b3580ccb55ae5db')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}