PKGBUILD


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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>

_pkgname=roastgsa
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Rotation based gene set analysis"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
  r-biobase
  r-ggplot2
  r-gplots
  r-limma
  r-rcolorbrewer
)
optdepends=(
  r-biocstyle
  r-deseq2
  r-enrichmentbrowser
  r-gseabenchmarker
  r-knitr
  r-preprocesscore
  r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('7858932475872098f416d274267446f6')
b2sums=('6182a69192d7606aabb851cae6b6c57ce38a26d173c6ea4f1c83036b2c75348b9f8178ef10adaf2de1908d2b1fe32c49bfe54a9f1f05bbcae0b7c530dee2f54f')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}