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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: sukanka <su975853527@gmail.com>
_pkgname=rstanarm
_pkgver=2.32.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=2
pkgdesc="Bayesian Applied Regression Modeling via Stan"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=('GPL-3.0-or-later')
depends=(
onetbb
pandoc
r-bayesplot
r-ggplot2
r-lme4
r-loo
r-posterior
r-rcpp
r-rcppparallel
r-rstan
r-rstantools
r-shinystan
)
makedepends=(
r-bh
r-rcppeigen
r-stanheaders
)
checkdepends=(
r-betareg
r-biglm
r-data.table
r-hsaur3
r-testthat
)
optdepends=(
r-betareg
r-biglm
r-data.table
r-digest
r-gamm4
r-gridextra
r-hsaur3
r-knitr
r-rmarkdown
r-roxygen2
r-shiny
r-stanheaders
r-testthat
r-v8
)
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('7156d76d81012785925295a8e4bdd7bc')
b2sums=('5c6e256a9066287eb600259c957c86e488cb2ce79d80a5e62404c10ab5331e21e2e93a7a49699753f4af67ec4f78cb94a2a98142ecea6fa1a4ebc36c0ad0c45f')
prepare() {
cd "$_pkgname/tests/testthat"
# skip tests that make a coredump
sed -e '/"stan_betareg ok when modeling x and z (link.phi = '\'sqrt\'')"/a\ \ skip("dumps core")' \
-e '/"heavy tailed priors work with stan_betareg"/a\ \ skip("dumps core")' \
-i test_stan_betareg.R
sed -i '1i skip("dumps core")' test_stan_jm.R
sed -i '/"multiple grouping factors are ok"/a\ \ skip("dumps core")' test_stan_mvmer.R
}
build() {
mkdir build
# compilation needs a lot of memory
MAKEFLAGS+=" -j1"
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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