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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=RTCGA
_pkgver=1.36.0
pkgname=r-${_pkgname,,}
pkgver=1.36.0
pkgrel=1
pkgdesc='The Cancer Genome Atlas Data Integration'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-assertthat
r-data.table
r-dplyr
r-ggplot2
r-ggthemes
r-knitr
r-purrr
r-rvest
r-scales
r-stringi
r-survminer
r-viridis
r-xml
r-xml2
r-rcurl
r-rmarkdown
r-htmltools
)
optdepends=(
r-biobase
r-devtools
r-genomicranges
r-iranges
r-magrittr
r-pander
r-rtcga.clinical
r-rtcga.cnv
r-rtcga.methylation
r-rtcga.mirnaseq
r-rtcga.mrna
r-rtcga.mutations
r-rtcga.rnaseq
r-rtcga.rppa
r-s4vectors
r-testthat
r-tidyr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('24bf183f9e4b986c8edccf6b6fa5a969a3370103fb40956edd73be7298ebce74')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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