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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=RVS
_pkgver=1.28.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Computes estimates of the probability of related individuals sharing a rare variant"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only')
depends=(
r-genlib
r-grain
r-kinship2
r-r.utils
r-snpstats
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-testthat
r-variantannotation
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('01c75a05d91e9ae8d3058976f52671e2')
b2sums=('9ed2f88805c2b5cafc48e4e4c5473c41d4272bd2a6d93776ccd5d3e8a31bf969397973903fb8dd291fc2069da269b5cad3f6096f48606d34061c2f9f04c1ca4c')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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