PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=RVS
_pkgver=1.30.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Computes estimates of the probability of related individuals sharing a rare variant"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only')
depends=(
  r-genlib
  r-grain
  r-kinship2
  r-r.utils
  r-snpstats
)
optdepends=(
  r-biocstyle
  r-knitr
  r-rmarkdown
  r-testthat
  r-variantannotation
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('164cbc063f98623e54d07e09d42f1b73')
b2sums=('dabf689c917dfff9db67b172fd65712b1255d06d5116ed5dc60d25f340cdd72559415b8fbfb083becb13596acbab16128df87bd6ef16c2e4727efcbac89e9e82')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}