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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=SCArray.sat
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Large-scale single-cell RNA-seq data analysis using GDS files and Seurat"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-biocgenerics
r-biocparallel
r-biocsingular
r-delayedarray
r-gdsfmt
r-s4vectors
r-scarray
r-seurat
r-seuratobject
r-summarizedexperiment
)
checkdepends=(
r-runit
)
optdepends=(
r-biocstyle
r-future
r-knitr
r-markdown
r-rmarkdown
r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('d4b0240454c68414b40c35b70d51f85d')
b2sums=('e1382f5e4ecbd1b82ad507cd1cf23f2526d4292665da0e3fecf56e9af7ecccbeb76298adda584124ceca158b633c0044633d60a9d34580a156eb9b206bd58f66')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" Rscript --vanilla runTests.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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