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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=SCArray.sat
_pkgver=1.12.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Large-scale single-cell RNA-seq data analysis using GDS files and Seurat"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-biocgenerics
r-biocparallel
r-biocsingular
r-delayedarray
r-gdsfmt
r-s4vectors
r-scarray
r-seurat
r-seuratobject
r-summarizedexperiment
)
checkdepends=(
r-runit
)
optdepends=(
r-biocstyle
r-future
r-knitr
r-markdown
r-rmarkdown
r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('42e660d3b8f65e325a79dcc004d17485')
b2sums=('e3720a3ef8064e5adc28011287cc89a6ee1ea560177f36b3a4c597c58d664d6fa9bd8c96f375091c7f38c4c2f285f99897658c6995b8aa60483782926abc19bd')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" Rscript --vanilla runTests.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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