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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=scClassifR
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=1.2.0
pkgrel=3
pkgdesc='Pretrained learning models for cell type prediction on single cell RNA-sequencing data'
arch=('any')
url="https://bioconductor.org/packages/3.14/bioc/html/scClassifR.html"
license=('MIT')
depends=(
r
r-ape
r-caret
r-data.tree
r-dplyr
r-e1071
r-ggplot2
r-kernlab
r-proc
r-rocr
r-seurat
r-singlecellexperiment
r-summarizedexperiment
)
optdepends=(
r-knitr
r-rmarkdown
r-scrnaseq
r-testthat
)
source=("https://bioconductor.org/packages/3.14/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('ff8b75c0b67f144986b7a6da513b531644ec262f3e58bc71ee0a281b0b4e345d')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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