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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=scDDboost
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="A compositional model to assess expression changes from single-cell rna-seq data"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-or-later')
depends=(
r-biocparallel
r-ebseq
r-ggplot2
r-mclust
r-oscope
r-rcpp
r-rcppeigen
r-singlecellexperiment
r-summarizedexperiment
)
makedepends=(
r-bh
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('8d7022903043c4e93fdc1c026be7bba8')
b2sums=('b2056b8ecaf5e4caa0015660c0a38d8ae19b9eb12c049816accf5932eb01a1449e26a273c8986f446582d99928ebb87845aa5630a062f167c27d53782288468f')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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