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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=scDesign3
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="A unified framework of realistic in silico data generation and statistical model inference for single-cell and spatial omics"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-biocparallel
r-coop
r-dplyr
r-gamlss
r-gamlss.dist
r-ggplot2
r-irlba
r-matrixstats
r-mclust
r-mvtnorm
r-pbmcapply
r-rvinecopulib
r-singlecellexperiment
r-sparsemvn
r-summarizedexperiment
r-tibble
r-umap
r-viridis
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-igraph
r-knitr
r-mvnfast
r-refmanager
r-rmarkdown
r-sessioninfo
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('8ee455ffed57d35cfbf4605d48e4d976')
b2sums=('0db03c2643fd26e92b971d420027f4fd6825b56276f80d316f68b486c7bfb46da52e7ddc20f6d501647c1c0889526e28a901e8f374b50b3e733e9840c03d25d5')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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