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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=scider
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Spatial cell-type inter-correlation by density in R"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-ggplot2
r-igraph
r-isoband
r-janitor
r-knitr
r-lwgeom
r-pheatmap
r-plotly
r-rlang
r-s4vectors
r-sf
r-shiny
r-spatialexperiment
r-spatstat.explore
r-spatstat.geom
r-summarizedexperiment
)
checkdepends=(
r-edger
r-testthat
)
optdepends=(
r-edger
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('dd1612c00ad1208e07d1f52c3e8e456f')
b2sums=('bec6a35dd1a1680ff6135ac5f06a3876b627bb6891342ed417b7e0ac75c35201873ab59497538110022a27c92933e6fdd7b353b00cc510c34256277355ef6665')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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