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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=scMET
_pkgver=1.14.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Bayesian modelling of cell-to-cell DNA methylation heterogeneity"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
onetbb
r-assertthat
r-biocstyle
r-coda
r-cowplot
r-data.table
r-dplyr
r-ggplot2
r-logitnorm
r-matrixstats
r-rcpp
r-rcppparallel
r-rstan
r-rstantools
r-s4vectors
r-singlecellexperiment
r-summarizedexperiment
r-vgam
r-viridis
)
makedepends=(
r-bh
r-rcppeigen
r-stanheaders
)
checkdepends=(
r-testthat
)
optdepends=(
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('c0cba7ed78dfcdf19f01e977014dba61')
b2sums=('49e8804fd24396de5bf3dc0833cdc70218d0036fd8bebd545dacf8227a3192036e1918791675ae86b1fc68a73681ab9f0402c0993881af1f332412ada6bea4ab')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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