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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=scone
_pkgver=1.28.0
pkgname=r-${_pkgname,,}
pkgver=1.28.0
pkgrel=1
pkgdesc='Single Cell Overview of Normalized Expression data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-aroma.light
r-biocparallel
r-compositions
r-diptest
r-edger
r-fpc
r-gplots
r-hexbin
r-limma
r-matrixgenerics
r-matrixstats
r-mixtools
r-rarpack
r-rcolorbrewer
r-rhdf5
r-ruvseq
r-singlecellexperiment
r-summarizedexperiment
)
optdepends=(
r-batchtools
r-biocstyle
r-doparallel
r-dt
r-ggplot2
r-kableextra
r-knitr
r-mclust
r-miniui
r-nmf
r-plotly
r-reshape2
r-rmarkdown
r-scater
r-scran
r-scrnaseq
r-shiny
r-splatter
r-tenxpbmcdata
r-testthat
r-visnetwork
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('207ad33460454f77b3b78cc1b48a42f8c0e8c4da877c3203ec5b0ddd986176e3')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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