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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=scp
_pkgver=1.14.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Mass Spectrometry-Based Single-Cell Proteomics Data Analysis"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-dplyr
r-ggplot2
r-ggrepel
r-ihw
r-matrixstats
r-metapod
r-mscoreutils
r-multiassayexperiment
r-nipals
r-qfeatures
r-rcolorbrewer
r-s4vectors
r-singlecellexperiment
r-summarizedexperiment
)
optdepends=(
r-biocstyle
r-impute
r-knitr
r-msdatahub
r-patchwork
r-preprocesscore
r-rmarkdown
r-scater
r-scpdata
r-sva
r-testthat
r-uwot
r-vsn
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('6d0918024a41e466059a694476266f3a')
b2sums=('de9333382576510dad4ffb409842d0d46e43a55b24a86aea6409f9d79a4744d95b21e24d34bed06005c4a5af898a17e44fbd79d4747aac18703dd1ace394877b')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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